library(trena)
print(load("../extdata/bugDemoData/solver.bug.2017-11-01.09:49:40.RData"))
solver <- EnsembleSolver(mtx, targetGene, candidates, solver.names)
run(solver)
# paul-shannon's sessionInfo
# R version 3.4.1 (2017-06-30)
# Platform: x86_64-apple-darwin15.6.0 (64-bit)
# Running under: macOS Sierra 10.12.3
#
# Matrix products: default
# BLAS: /Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libRblas.0.dylib
# LAPACK: /Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libRlapack.dylib
#
# locale:
# [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
#
# attached base packages:
# [1] stats4 parallel stats graphics grDevices utils datasets methods base
#
# other attached packages:
# [1] RUnit_0.4.31 biomaRt_2.32.1 org.Mm.eg.db_3.4.1 annotate_1.54.0 XML_3.98-1.9 AnnotationDbi_1.38.2 Biobase_2.36.2 colorspace_1.3-2 trenaViz_0.99.24 GenomicRanges_1.28.6 GenomeInfoDb_1.12.3 graph_1.54.0 Rcpp_0.12.13 BrowserViz_1.9.15 httpuv_1.3.5 jsonlite_1.5 trena_0.99.192 MotifDb_1.19.18 Biostrings_2.44.2 XVector_0.16.0 IRanges_2.10.5 S4Vectors_0.14.7 BiocGenerics_0.22.1 glmnet_2.0-13 foreach_1.4.3 Matrix_1.2-11
#
# loaded via a namespace (and not attached):
# [1] BSgenome.Hsapiens.UCSC.hg38_1.4.1 lattice_0.20-35 Rsamtools_1.28.0 digest_0.6.12 BSgenome.Mmusculus.UCSC.mm10_1.4.0 lassopv_0.1.3 lars_1.2 RSQLite_2.0 zlibbioc_1.22.0 rlang_0.1.2 RPostgreSQL_0.6-2 data.table_1.10.4-2 blob_1.1.0 RMySQL_0.10.13 BiocParallel_1.10.1 SNPlocs.Hsapiens.dbSNP150.GRCh38_0.99.20 stringr_1.2.0 igraph_1.1.2 RCurl_1.95-4.8 bit_1.1-12 DelayedArray_0.2.7 compiler_3.4.1 rtracklayer_1.36.6 pkgconfig_2.0.1 vbsr_0.0.5 SummarizedExperiment_1.6.5 tibble_1.3.4 GenomeInfoDbData_0.99.0 codetools_0.2-15 matrixStats_0.52.2 randomForest_4.6-12 BSgenome.Hsapiens.UCSC.hg19_1.4.0 GenomicAlignments_1.12.2 MASS_7.3-47 bitops_1.0-6 grid_3.4.1 xtable_1.8-2 DBI_0.7 magrittr_1.5 stringi_1.1.5 splitstackshape_1.4.2 org.Hs.eg.db_3.4.1 iterators_1.0.8 tools_3.4.1 bit64_0.9-7 BSgenome_1.44.2 flare_1.5.0 memoise_1.1.0
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