prep/featureTable/get-eQTLs.R
In PriceLab/TReNA: Fit transcriptional regulatory networks using gene expression, priors, machine learning
library(EndophenotypeExplorer)
targetGene <- "NDUFS2"
etx <- EndophenotypeExplorer$new(targetGene, "hg19", vcf.project="AMPAD")
tbl.eqtl <- etx$get.ampad.EQTLsForGene()
tbl.eqtl.ndufs2.hg19 <- subset(tbl.eqtl, pvalue < 1e-4)
save(tbl.eqtl.ndufs2.hg19, file="../../inst/extdata/featureTable/eqtls.ndufs2.RData")
PriceLab/TReNA documentation built on March 21, 2023, 1:57 p.m.
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library(EndophenotypeExplorer)
targetGene <- "NDUFS2"
etx <- EndophenotypeExplorer$new(targetGene, "hg19", vcf.project="AMPAD")
tbl.eqtl <- etx$get.ampad.EQTLsForGene()
tbl.eqtl.ndufs2.hg19 <- subset(tbl.eqtl, pvalue < 1e-4)
save(tbl.eqtl.ndufs2.hg19, file="../../inst/extdata/featureTable/eqtls.ndufs2.RData")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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