TrenaProjectHG38-class: TrenaProjectHG38

In PriceLab/TrenaProjectHG38: TrenaProjectHG38 - an abstract base class for all hg38 projects

TrenaProjectHG38

Description

TrenaProjectHG38 and its (projected) subclasses provide convenient containers in which to collect trena-related aggregation of a gene's (a hierarchy of classes) including expression data, transcript and variant info, genomic and epigenomic context, trena models and/or the means to create them

Usage

TrenaProjectHG38(
  projectName,
  supportedGenes,
  footprintDatabaseHost,
  footprintDatabaseNames,
  footprintDatabasePort = 5432,
  packageDataDirectory,
  quiet
)

Arguments

supportedGenes	a vector of character strings
footprintDatabaseHost	Character string (e.g., "khaleesi.systemsbiology.net")
footprintDatabaseNames	Character string (e.g., "hint_brain_20")
packageDataDirectory	A string pointing to the parent of a more-or-less standard set of data subdirectories
quiet	A logical indicating whether or not the Trena object should print output

Value

An object of the TrenaProjectHG38 class

PriceLab/TrenaProjectHG38 documentation built on July 5, 2022, 3:25 p.m.