TrenaProjectHG38-class: TrenaProjectHG38

TrenaProjectHG38-classR Documentation

TrenaProjectHG38

Description

TrenaProjectHG38 and its (projected) subclasses provide convenient containers in which to collect trena-related aggregation of a gene's (a hierarchy of classes) including expression data, transcript and variant info, genomic and epigenomic context, trena models and/or the means to create them

Usage

TrenaProjectHG38(
  projectName,
  supportedGenes,
  footprintDatabaseHost,
  footprintDatabaseNames,
  footprintDatabasePort = 5432,
  packageDataDirectory,
  quiet
)

Arguments

supportedGenes

a vector of character strings

footprintDatabaseHost

Character string (e.g., "khaleesi.systemsbiology.net")

footprintDatabaseNames

Character string (e.g., "hint_brain_20")

packageDataDirectory

A string pointing to the parent of a more-or-less standard set of data subdirectories

quiet

A logical indicating whether or not the Trena object should print output

Value

An object of the TrenaProjectHG38 class


PriceLab/TrenaProjectHG38 documentation built on July 5, 2022, 3:25 p.m.