TrenaProjectHG38-class | R Documentation |
TrenaProjectHG38 and its (projected) subclasses provide convenient containers in which to collect trena-related aggregation of a gene's (a hierarchy of classes) including expression data, transcript and variant info, genomic and epigenomic context, trena models and/or the means to create them
TrenaProjectHG38( projectName, supportedGenes, footprintDatabaseHost, footprintDatabaseNames, footprintDatabasePort = 5432, packageDataDirectory, quiet )
supportedGenes |
a vector of character strings |
footprintDatabaseHost |
Character string (e.g., "khaleesi.systemsbiology.net") |
footprintDatabaseNames |
Character string (e.g., "hint_brain_20") |
packageDataDirectory |
A string pointing to the parent of a more-or-less standard set of data subdirectories |
quiet |
A logical indicating whether or not the Trena object should print output |
An object of the TrenaProjectHG38 class
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