inst/unitTests/remoteAlignmentTrackDemo.R
In PriceLab/igvR: igvR: integrative genomics viewer
library(igvR)
igv <- igvR()
setGenome(igv, "hg19")
showGenomicRegion(igv, "GATA2")
url <- "https://1000genomes.s3.amazonaws.com/phase3/data/HG02450/alignment/HG02450.mapped.ILLUMINA.bwa.ACB.low_coverage.20120522.bam"
index <- "https://1000genomes.s3.amazonaws.com/phase3/data/HG02450/alignment/HG02450.mapped.ILLUMINA.bwa.ACB.low_coverage.20120522.bam.bai"
track <- RemoteAlignmentTrack("Alignment", url, index)
displayTrack(igv, track)
PriceLab/igvR documentation built on Sept. 6, 2022, 5:45 a.m.
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library(igvR)
igv <- igvR()
setGenome(igv, "hg19")
showGenomicRegion(igv, "GATA2")
url <- "https://1000genomes.s3.amazonaws.com/phase3/data/HG02450/alignment/HG02450.mapped.ILLUMINA.bwa.ACB.low_coverage.20120522.bam"
index <- "https://1000genomes.s3.amazonaws.com/phase3/data/HG02450/alignment/HG02450.mapped.ILLUMINA.bwa.ACB.low_coverage.20120522.bam.bai"
track <- RemoteAlignmentTrack("Alignment", url, index)
displayTrack(igv, track)
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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