getPfms: Retrieve the motifs from the pfms slot
In PriceLab/trena: Fit transcriptional regulatory networks using gene expression, priors, machine learning
getPfms,MotifMatcher-method R Documentation
Retrieve the motifs from the pfms slot
Description
Given a MotifMatcher object, return the motifs, which are stored in the pfms slot.
Usage
## S4 method for signature 'MotifMatcher'
getPfms(obj)
Arguments
obj
An object of class MotifMatcher
Value
The list of motif matrices stored in the pfms slot.
Examples
# Return the default matrix of JASPAR motifs
library(MotifDb)
motifMatcher <- MotifMatcher(genomeName="hg38", pfms = as.list(query(MotifDb, "sapiens")))
motifs <- getPfms(motifMatcher)
PriceLab/trena documentation built on March 16, 2023, 10:01 a.m.
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| getPfms,MotifMatcher-method | R Documentation |
Retrieve the motifs from the pfms slot
Description
Given a MotifMatcher object, return the motifs, which are stored in the pfms slot.
Usage
## S4 method for signature 'MotifMatcher' getPfms(obj)
Arguments
obj |
An object of class MotifMatcher |
Value
The list of motif matrices stored in the pfms slot.
Examples
# Return the default matrix of JASPAR motifs library(MotifDb) motifMatcher <- MotifMatcher(genomeName="hg38", pfms = as.list(query(MotifDb, "sapiens"))) motifs <- getPfms(motifMatcher)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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