getRegulators: Retrieve the candiate regulators from a Solver object
In PriceLab/trena: Fit transcriptional regulatory networks using gene expression, priors, machine learning
getRegulators,Solver-method R Documentation
Retrieve the candiate regulators from a Solver object
Description
Retrieve the candiate regulators from a Solver object
Usage
## S4 method for signature 'Solver'
getRegulators(obj)
Arguments
obj
An object of class Solver
Value
The candidate regulators associated with a Solver object
Examples
# Create a Solver object using the included Alzheimer's data and retrieve the regulators
load(system.file(package="trena", "extdata/ampAD.154genes.mef2cTFs.278samples.RData"))
targetGene <- "MEF2C"
candidateRegulators <- setdiff(rownames(mtx.sub), targetGene)
solver <- Solver(mtx.sub, targetGene, candidateRegulators)
regs <- getRegulators(solver)
PriceLab/trena documentation built on March 16, 2023, 10:01 a.m.
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| getRegulators,Solver-method | R Documentation |
Retrieve the candiate regulators from a Solver object
Description
Retrieve the candiate regulators from a Solver object
Usage
## S4 method for signature 'Solver' getRegulators(obj)
Arguments
obj |
An object of class Solver |
Value
The candidate regulators associated with a Solver object
Examples
# Create a Solver object using the included Alzheimer's data and retrieve the regulators load(system.file(package="trena", "extdata/ampAD.154genes.mef2cTFs.278samples.RData")) targetGene <- "MEF2C" candidateRegulators <- setdiff(rownames(mtx.sub), targetGene) solver <- Solver(mtx.sub, targetGene, candidateRegulators) regs <- getRegulators(solver)
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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