getTarget: Retrieve the target gene from a Solver object

In PriceLab/trena: Fit transcriptional regulatory networks using gene expression, priors, machine learning

Retrieve the target gene from a Solver object

Description

Retrieve the target gene from a Solver object

Usage

## S4 method for signature 'Solver'
getTarget(obj)

Arguments

obj	An object of class Solver

Value

The target gene associated with a Solver object

Examples

# Create a Solver object using the included Alzheimer's data and retrieve the target gene
load(system.file(package="trena", "extdata/ampAD.154genes.mef2cTFs.278samples.RData"))
targetGene <- "MEF2C"
candidateRegulators <- setdiff(rownames(mtx.sub), targetGene)
solver <- Solver(mtx.sub, targetGene, candidateRegulators)
target <- getTarget(solver) 

PriceLab/trena documentation built on March 16, 2023, 10:01 a.m.