Man pages for PriceLab/trenaValidator
can trena reproduce known TF/targetGene relationships?
| buildModel | return a trena model |
| findEnhancers | query and store the GeneHancer regions for the targetGene |
| getSimplePromoter | a simple single regulatory region oritened around the tss |
| getTFBS.bioc | return the TFBS using the bioc pwm match, trena MotifMatcher... |
| getTFBS.fimo | return the TFBS |
| getTFBS.moods | return the TFBS |
| setMatrix | set the matrix to use in model building |
| setRegulatoryRegionsTable | set the regulatory regions table |
| TrenaValidator-class | TrenaValidator-class |
