Description Usage Arguments Value
return the TFBS using the bioc pwm match, trena MotifMatcher class
1 2 | ## S4 method for signature 'TrenaValidator'
getTFBS.bioc(obj, tbl.regions, match.threshold, conservation.threshold, pwms)
|
obj |
An instance of the TrenaValidator class |
tbl.regions |
a data.frame with chrom, start, end columns |
match.threshold |
numeric, between 0 and 100 |
conservation.threshold |
numeric, between zero and one |
pwms |
a list of motifs from MotifDb |
a data.frame
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