getTFBS.bioc: return the TFBS using the bioc pwm match, trena MotifMatcher...
In PriceLab/trenaValidator: can trena reproduce known TF/targetGene relationships?
Description
Usage
Arguments
Value
Description
return the TFBS using the bioc pwm match, trena MotifMatcher class
Usage
1
2
## S4 method for signature 'TrenaValidator'
getTFBS.bioc(obj, tbl.regions, match.threshold, conservation.threshold, pwms)
Arguments
obj
An instance of the TrenaValidator class
tbl.regions
a data.frame with chrom, start, end columns
match.threshold
numeric, between 0 and 100
conservation.threshold
numeric, between zero and one
pwms
a list of motifs from MotifDb
Value
a data.frame
PriceLab/trenaValidator documentation built on Dec. 24, 2019, 5:08 p.m.
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Description Usage Arguments Value
Description
return the TFBS using the bioc pwm match, trena MotifMatcher class
Usage
1 2 | ## S4 method for signature 'TrenaValidator'
getTFBS.bioc(obj, tbl.regions, match.threshold, conservation.threshold, pwms)
|
Arguments
obj |
An instance of the TrenaValidator class |
tbl.regions |
a data.frame with chrom, start, end columns |
match.threshold |
numeric, between 0 and 100 |
conservation.threshold |
numeric, between zero and one |
pwms |
a list of motifs from MotifDb |
Value
a data.frame
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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