Man pages for PriceLab/trenaValidator
can trena reproduce known TF/targetGene relationships?

buildModelreturn a trena model
findEnhancersquery and store the GeneHancer regions for the targetGene
getSimplePromotera simple single regulatory region oritened around the tss
getTFBS.biocreturn the TFBS using the bioc pwm match, trena MotifMatcher...
getTFBS.fimoreturn the TFBS
getTFBS.moodsreturn the TFBS
setMatrixset the matrix to use in model building
setRegulatoryRegionsTableset the regulatory regions table
PriceLab/trenaValidator documentation built on Dec. 24, 2019, 5:08 p.m.