getTFBS.moods: return the TFBS
In PriceLab/trenaValidator: can trena reproduce known TF/targetGene relationships?
Description
Usage
Arguments
Value
Description
return the TFBS
Usage
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## S4 method for signature 'TrenaValidator'
getTFBS.moods(
obj,
tbl.regions,
match.threshold,
conservation.threshold,
motifs
)
Arguments
obj
An instance of the TrenaValidator class
tbl.regions
a data.frame with chrom, start, end columns
match.threshold
numeric, 1e-4 for example
conservation.threshold
numeric, between zero and one
motifs
a list of motifs, the result of a MotifDb query
Value
a data.frame
PriceLab/trenaValidator documentation built on Dec. 24, 2019, 5:08 p.m.
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Description Usage Arguments Value
Description
return the TFBS
Usage
1 2 3 4 5 6 7 8 | ## S4 method for signature 'TrenaValidator'
getTFBS.moods(
obj,
tbl.regions,
match.threshold,
conservation.threshold,
motifs
)
|
Arguments
obj |
An instance of the TrenaValidator class |
tbl.regions |
a data.frame with chrom, start, end columns |
match.threshold |
numeric, 1e-4 for example |
conservation.threshold |
numeric, between zero and one |
motifs |
a list of motifs, the result of a MotifDb query |
Value
a data.frame
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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