Files in PuttickMacroevolution/MCMCTreeR
Prepare MCMCtree Analyses and Plot Bayesian Divergence Time Analyses Estimates on Trees
.DS_Store
.Rapp.history
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/.DS_Store
R/.Rapp.history
R/apeData.R
R/cauchyMCMCTree.R
R/estimateBound.R
R/estimateCauchy.R
R/estimateFixed.R
R/estimateGamma.R
R/estimateSkewNormal.R
R/estimateSkewt.R
R/estimateUpper.R
R/mcmc.tree.plot.R
R/mcmcPhyOneNode.R
R/mcmcTreePhy.R
R/mcmctree.output.R
R/nodeTimes.R
R/nodeToPhy.R
R/plotMCMCTree.R
R/priorPosterior.R
R/read.in.beast2.R
R/read.in.mrbayes.R
R/read.in.revbayes.R
R/readMCMCTree.R
R/time.colour.R
R/tipDes.R
R/uniformMCMCTree.R
README.md
data/.DS_Store
data/apeData.RData
data/mcmctree.output.RData
man/apeData.Rd
man/estimateBound.Rd
man/estimateCauchy.Rd
man/estimateFixed.Rd
man/estimateGamma.Rd
man/estimateSkewNormal.Rd
man/estimateSkewT.Rd
man/estimateUpper.Rd
man/mcmc.tree.plot.Rd
man/mcmcTreePhy.Rd
man/mcmctree.output.Rd
man/nodeToPhy.Rd
man/plotMCMCTree.Rd
man/priorPosterior.Rd
man/readMCMCTree.Rd
man/tipDes.Rd
pamlDOC.pdf
src/.gitignore
vignettes/.DS_Store
vignettes/.MCMCtree.html.icloud
vignettes/.Rhistory
vignettes/MCMCtree.Rmd
vignettes/MCMCtree/.DS_Store
vignettes/MCMCtree/Figure1unnamed-chunk-3-1.pdf
vignettes/MCMCtree/Figure2unnamed-chunk-6-1.pdf
vignettes/MCMCtree/Figure3unnamed-chunk-11-1.pdf
vignettes/MCMCtree/Figure4unnamed-chunk-12-1.pdf
vignettes/MCMCtree/Figure5unnamed-chunk-13-1.pdf
vignettes/MCMCtree/Figure6unnamed-chunk-14-1.pdf
vignettes/MCMCtree/Figure7unnamed-chunk-15-1.pdf
vignettes/MCMCtree/Figure8unnamed-chunk-16-1.pdf
vignettes/MCMCtree/unnamed-chunk-11-1.png
vignettes/MCMCtree/unnamed-chunk-12-1.png
vignettes/MCMCtree/unnamed-chunk-13-1.png
vignettes/MCMCtree/unnamed-chunk-14-1.png
vignettes/MCMCtree/unnamed-chunk-15-1.png
vignettes/MCMCtree/unnamed-chunk-16-1.png
vignettes/MCMCtree/unnamed-chunk-3-1.png
vignettes/MCMCtree/unnamed-chunk-6-1.png
vignettes/MCMCtree_pdf.pdf
vignettes/MCMCtree_plot.Rmd
vignettes/MCMCtree_plot_fig/.DS_Store
vignettes/MCMCtree_plot_fig/Figure10unnamed-chunk-14-1.pdf
vignettes/MCMCtree_plot_fig/Figure10unnamed-chunk-14-1.png
vignettes/MCMCtree_plot_fig/Figure11unnamed-chunk-16-1.pdf
vignettes/MCMCtree_plot_fig/Figure11unnamed-chunk-16-1.png
vignettes/MCMCtree_plot_fig/Figure12unnamed-chunk-18-1.pdf
vignettes/MCMCtree_plot_fig/Figure12unnamed-chunk-18-1.png
vignettes/MCMCtree_plot_fig/Figure1unnamed-chunk-4-1.pdf
vignettes/MCMCtree_plot_fig/Figure2unnamed-chunk-4-1.pdf
vignettes/MCMCtree_plot_fig/Figure2unnamed-chunk-4-1.png
vignettes/MCMCtree_plot_fig/Figure3unnamed-chunk-5-1.pdf
vignettes/MCMCtree_plot_fig/Figure3unnamed-chunk-5-1.png
vignettes/MCMCtree_plot_fig/Figure4unnamed-chunk-6-1.pdf
vignettes/MCMCtree_plot_fig/Figure4unnamed-chunk-6-1.png
vignettes/MCMCtree_plot_fig/Figure5unnamed-chunk-7-1.pdf
vignettes/MCMCtree_plot_fig/Figure5unnamed-chunk-7-1.png
vignettes/MCMCtree_plot_fig/Figure6unnamed-chunk-8-1.pdf
vignettes/MCMCtree_plot_fig/Figure6unnamed-chunk-8-1.png
vignettes/MCMCtree_plot_fig/Figure7unnamed-chunk-11-1.pdf
vignettes/MCMCtree_plot_fig/Figure7unnamed-chunk-11-1.png
vignettes/MCMCtree_plot_fig/Figure8unnamed-chunk-12-1.pdf
vignettes/MCMCtree_plot_fig/Figure8unnamed-chunk-12-1.png
vignettes/MCMCtree_plot_fig/Figure9unnamed-chunk-13-1.pdf
vignettes/MCMCtree_plot_fig/Figure9unnamed-chunk-13-1.png
vignettes/MCMCtree_plot_fig/plot1unnamed-chunk-2-1.pdf
vignettes/MCMCtree_plot_fig/plot1unnamed-chunk-2-1.png
vignettes/MCMCtree_plot_pdf.pdf
