readMCMCTree: Read MCMCTree output tree into R

Description Usage Arguments Value Examples

View source: R/readMCMCTree.R

Description

Read MCMCTree output tree into R to produce time-scaled tree in APE format, and a table of the mean and 95

Usage

1
readMCMCTree(inputPhy, forceUltrametric = TRUE)

Arguments

inputPhy

file directory of 'Figtree' output from MCMCTree

forceUltrametric

alters branch lengths at tips so tree is fully ultrametric (default = TRUE)

Value

apePhy time-scaled output tree from MCMCTree in APE format

nodeAges mean and 95

Examples

1

PuttickMacroevolution/MCMCTreeR documentation built on Nov. 20, 2017, 2:22 p.m.