Man pages for PuttickMacroevolution/MCMCtreeR
Prepare MCMCtree Analyses and Plot Bayesian Divergence Time Analyses Estimates on Trees

apeDataApeData Ape phylogeny in ape format, monophyletic clades, and...
estimateBoundEstimate a Uniform Distribution for MCMCtree
estimateCauchyEstimate Cauchy Distribution for MCMCtree
estimateFixedFixed Age for MCMCtree analysis input
estimateGammaEstimate Gamma Distribution for MCMCtree analysis
estimateSkewNormalEstimate Skew Normal for MCMCtree analysis
estimateSkewTEstimate Skew-t Distribution for MCMCtree analysis
estimateUpperEstimate Upper Age for MCMCtree analysis
mcmctree.outputMCMCtree.output
mcmcTreePhyMCMCtreePhy
mcmc.tree.plotPlot time-scaled phylogenies
nodeToPhyAdd Node Constraints to Tree in MCMCtree Format
plotMCMCTreePlot distribution from MCMCtree node estimations
priorPosteriorpriorPosterior
readMCMCTreeRead MCMCtree output tree into R
tipDesFind Descendent Tips From A Common Ancestor
PuttickMacroevolution/MCMCtreeR documentation built on May 17, 2019, 12:10 a.m.