Man pages for PuttickMacroevolution/MCMCtreeR
Prepare MCMCtree Analyses and Plot Bayesian Divergence Time Analyses Estimates on Trees
| apeData | ApeData Ape phylogeny in ape format, monophyletic clades, and... |
| estimateBound | Estimate a Uniform Distribution for MCMCtree |
| estimateCauchy | Estimate Cauchy Distribution for MCMCtree |
| estimateFixed | Fixed Age for MCMCtree analysis input |
| estimateGamma | Estimate Gamma Distribution for MCMCtree analysis |
| estimateSkewNormal | Estimate Skew Normal for MCMCtree analysis |
| estimateSkewT | Estimate Skew-t Distribution for MCMCtree analysis |
| estimateUpper | Estimate Upper Age for MCMCtree analysis |
| mcmctree.output | MCMCtree.output |
| mcmcTreePhy | MCMCtreePhy |
| mcmc.tree.plot | Plot time-scaled phylogenies |
| nodeToPhy | Add Node Constraints to Tree in MCMCtree Format |
| plotMCMCTree | Plot distribution from MCMCtree node estimations |
| priorPosterior | priorPosterior |
| readMCMCTree | Read MCMCtree output tree into R |
| tipDes | Find Descendent Tips From A Common Ancestor |
