Files in PuttickMacroevolution/MCMCtreeR
Prepare MCMCtree Analyses and Plot Bayesian Divergence Time Analyses Estimates on Trees

.DS_Store
.Rapp.history
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/.DS_Store
R/.Rapp.history
R/apeData.R R/cauchyMCMCTree.R R/estimateBound.R R/estimateCauchy.R R/estimateFixed.R R/estimateGamma.R R/estimateSkewNormal.R R/estimateSkewt.R R/estimateUpper.R R/mcmc.tree.plot.R R/mcmcPhyOneNode.R R/mcmcTreePhy.R R/mcmctree.output.R R/nodeTimes.R R/nodeToPhy.R R/plotMCMCTree.R R/priorPosterior.R R/read.in.mrbayes.R R/read.in.revbayes.R R/readMCMCTree.R R/time.colour.R R/tipDes.R R/uniformMCMCTree.R README.md
data/.DS_Store
data/apeData.RData
data/mcmctree.output.RData
man/apeData.Rd man/estimateBound.Rd man/estimateCauchy.Rd man/estimateFixed.Rd man/estimateGamma.Rd man/estimateSkewNormal.Rd man/estimateSkewT.Rd man/estimateUpper.Rd man/mcmc.tree.plot.Rd man/mcmcTreePhy.Rd man/mcmctree.output.Rd man/nodeToPhy.Rd man/plotMCMCTree.Rd man/priorPosterior.Rd man/readMCMCTree.Rd man/tipDes.Rd pamlDOC.pdf
vignettes/.DS_Store
vignettes/.Rhistory
vignettes/MCMCtree.Rmd
vignettes/MCMCtree/.DS_Store
vignettes/MCMCtree/Figure1unnamed-chunk-3-1.pdf vignettes/MCMCtree/Figure2unnamed-chunk-6-1.pdf vignettes/MCMCtree/Figure3unnamed-chunk-11-1.pdf vignettes/MCMCtree/Figure4unnamed-chunk-12-1.pdf vignettes/MCMCtree/Figure5unnamed-chunk-13-1.pdf vignettes/MCMCtree/Figure6unnamed-chunk-14-1.pdf vignettes/MCMCtree/Figure7unnamed-chunk-15-1.pdf vignettes/MCMCtree/Figure8unnamed-chunk-16-1.pdf
vignettes/MCMCtree/unnamed-chunk-11-1.png
vignettes/MCMCtree/unnamed-chunk-12-1.png
vignettes/MCMCtree/unnamed-chunk-13-1.png
vignettes/MCMCtree/unnamed-chunk-14-1.png
vignettes/MCMCtree/unnamed-chunk-15-1.png
vignettes/MCMCtree/unnamed-chunk-16-1.png
vignettes/MCMCtree/unnamed-chunk-3-1.png
vignettes/MCMCtree/unnamed-chunk-6-1.png
vignettes/MCMCtree_pdf.pdf vignettes/MCMCtree_plot.Rmd
vignettes/MCMCtree_plot_fig/.DS_Store
vignettes/MCMCtree_plot_fig/Figure10unnamed-chunk-14-1.pdf
vignettes/MCMCtree_plot_fig/Figure10unnamed-chunk-14-1.png
vignettes/MCMCtree_plot_fig/Figure11unnamed-chunk-16-1.pdf
vignettes/MCMCtree_plot_fig/Figure11unnamed-chunk-16-1.png
vignettes/MCMCtree_plot_fig/Figure12unnamed-chunk-18-1.pdf
vignettes/MCMCtree_plot_fig/Figure12unnamed-chunk-18-1.png
vignettes/MCMCtree_plot_fig/Figure1unnamed-chunk-4-1.pdf vignettes/MCMCtree_plot_fig/Figure2unnamed-chunk-4-1.pdf
vignettes/MCMCtree_plot_fig/Figure2unnamed-chunk-4-1.png
vignettes/MCMCtree_plot_fig/Figure3unnamed-chunk-5-1.pdf
vignettes/MCMCtree_plot_fig/Figure3unnamed-chunk-5-1.png
vignettes/MCMCtree_plot_fig/Figure4unnamed-chunk-6-1.pdf
vignettes/MCMCtree_plot_fig/Figure4unnamed-chunk-6-1.png
vignettes/MCMCtree_plot_fig/Figure5unnamed-chunk-7-1.pdf
vignettes/MCMCtree_plot_fig/Figure5unnamed-chunk-7-1.png
vignettes/MCMCtree_plot_fig/Figure6unnamed-chunk-8-1.pdf
vignettes/MCMCtree_plot_fig/Figure6unnamed-chunk-8-1.png
vignettes/MCMCtree_plot_fig/Figure7unnamed-chunk-11-1.pdf
vignettes/MCMCtree_plot_fig/Figure7unnamed-chunk-11-1.png
vignettes/MCMCtree_plot_fig/Figure8unnamed-chunk-12-1.pdf
vignettes/MCMCtree_plot_fig/Figure8unnamed-chunk-12-1.png
vignettes/MCMCtree_plot_fig/Figure9unnamed-chunk-13-1.pdf
vignettes/MCMCtree_plot_fig/Figure9unnamed-chunk-13-1.png
vignettes/MCMCtree_plot_fig/plot1unnamed-chunk-2-1.pdf
vignettes/MCMCtree_plot_fig/plot1unnamed-chunk-2-1.png
vignettes/MCMCtree_plot_pdf.pdf
PuttickMacroevolution/MCMCtreeR documentation built on May 17, 2019, 12:10 a.m.