COMPASSfitToCountsTable: Extract a table of counts from a COMPASSResult object
In RGLab/COMPASS: Combinatorial Polyfunctionality Analysis of Single Cells
COMPASSfitToCountsTable R Documentation
Extract a table of counts from a COMPASSResult object
Description
Returns a table of counts and parent counts for each cell subset in a COMPASS fit.
Usage
COMPASSfitToCountsTable(
x,
idcol = NULL,
parent = NULL,
drop = NULL,
stimName = NULL
)
Arguments
x
COMPASSResult
idcol
unquote variable name in the metadata for the subject id.
parent
character name of the parent population for this model fit. e.g. "CD4"
drop
numeric vector indicating the columns in the metadata to drop from the output. Usually sample-specific columns rather than subject specific columns.
stimName
the name of the stimulation
RGLab/COMPASS documentation built on Feb. 11, 2025, 4:40 p.m.
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| COMPASSfitToCountsTable | R Documentation |
Extract a table of counts from a COMPASSResult object
Description
Returns a table of counts and parent counts for each cell subset in a COMPASS fit.
Usage
COMPASSfitToCountsTable(
x,
idcol = NULL,
parent = NULL,
drop = NULL,
stimName = NULL
)
Arguments
x |
|
idcol |
unquote variable name in the metadata for the subject id. |
parent |
character name of the parent population for this model fit. e.g. "CD4" |
drop |
numeric vector indicating the columns in the metadata to drop from the output. Usually sample-specific columns rather than subject specific columns. |
stimName |
the name of the stimulation |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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