getAA-methods: query amino acids sequence

In RGLab/HIV.db: HIV Annotation

Description

query amino acids sequences of HivFeatures or Epitopes

Value

a character of amino acids sequence or a list of characters of amino acids sequences

Methods

signature(object = "environment")

signature(object = "Epitope")

signature(object = "HivFeature")

signature(object = "list")

Author(s)

Mike Jiang,Raphael Gottardo

See Also

getDNA,getFeature

Examples

library(HIV.db)

## load Table from db
HIV_db<-loadFeatures(ref="env")
##########################
#query amino acid sequence 
#######################
#by environment
getAA(HIV_db)

#by feature
feature1<-getFeature(HIV_db)
getAA(feature1)
#by name
getAA(feature1, name="gp120")

#by Epitope
getAA(getEpitope(HIV_db, start=100, end=200))

RGLab/HIV.db documentation built on May 8, 2019, 5:51 a.m.