getDNA-methods: query DNA sequence

In RGLab/HIV.db: HIV Annotation

Description

query DNA sequences of HivFeatures or Epitopes or a certain range within HXB2 genome

Value

a character of DNA sequence or a list of characters of DNA sequences

Methods

signature(object = "environment")

signature(object = "HivFeature")

signature(object = "list")

Author(s)

Mike Jiang,Raphael Gottardo

See Also

getAA,getFeature

Examples

library(HIV.db)

## load Table from db
HIV_env<-loadFeatures(ref="env")
##########################
#query DNA sequence 
#######################

feature1<-getFeature(HIV_env)

#by feature
getDNA(feature1)

#by feature list
getDNA(feature1, name=c("gp41","gp120"))

#by Epitope
getDNA(getEpitope(HIV_env,name="2F5"))

RGLab/HIV.db documentation built on May 8, 2019, 5:51 a.m.