CovFromBoots: Extract the inter-gene covariance matrices for continuous and...
In RGLab/MAST: Model-based Analysis of Single Cell Transcriptomics
CovFromBoots R Documentation
Extract the inter-gene covariance matrices for continuous and discrete components of a MAST model for a given coefficient from bootstrap replicates
Description
Computes the genewise covariance for a model coefficient from bootstrap replicates
from 'MAST::bootVcov1()'. If coefficients are unestimable (i.e. NA) for a gene, that row/column in the
covariance matrix will be NA. Returns a list with components "C" and "D" containing the covariance
matrices for the "C"ontinuous and "D"iscrete components of the MAST model.
Usage
CovFromBoots(boots = NULL, coefficient = NULL)
Arguments
boots
a multidimensional array returned by 'bootVcov1' or 'pbootVcov1'.
coefficient
'character' the name of the model coefficient for which to return the inter-gene covariance matrices.
Value
list with components "C" and "D" containing covariance matrices for the continuous and discrete components of the model.
RGLab/MAST documentation built on Sept. 30, 2023, 1:08 p.m.
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| CovFromBoots | R Documentation |
Extract the inter-gene covariance matrices for continuous and discrete components of a MAST model for a given coefficient from bootstrap replicates
Description
Computes the genewise covariance for a model coefficient from bootstrap replicates from 'MAST::bootVcov1()'. If coefficients are unestimable (i.e. NA) for a gene, that row/column in the covariance matrix will be NA. Returns a list with components "C" and "D" containing the covariance matrices for the "C"ontinuous and "D"iscrete components of the MAST model.
Usage
CovFromBoots(boots = NULL, coefficient = NULL)
Arguments
boots |
a multidimensional array returned by 'bootVcov1' or 'pbootVcov1'. |
coefficient |
'character' the name of the model coefficient for which to return the inter-gene covariance matrices. |
Value
list with components "C" and "D" containing covariance matrices for the continuous and discrete components of the model.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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