plotlrt: Plot a likelihood ratio test object

In RGLab/MAST: Model-based Analysis of Single Cell Transcriptomics

Plot a likelihood ratio test object

Description

Constructs a forest-like plot of signed log10 p-values, possibly adjusted for multiple comparisons adjust can be one of "holm", "hochberg", "hommel", "bonferroni", "BH", "BY", "fdr", "none".

Usage

plotlrt(lr, adjust = "fdr", thres = 0.1, trunc = 1e-06, groups = NULL)

Arguments

lr	output from lrtest, with returnall=FALSE
adjust	character, passed along to p.adjust, see below
thres	numeric genes with adjusted pvalues above this value are not depicted
trunc	numeric p values below this value are truncated at this value
groups	character grouping value. If provided, must match groups argument passed to lrtest. Plots done separately for each group.

Value

Constructs a dotplot

Author(s)

andrew

RGLab/MAST documentation built on Sept. 30, 2023, 1:08 p.m.