merge.quad.gates: extend the original flowWorkspace:::.mergeGates function to...

In RGLab/ggcyto: Visualize Cytometry data with ggplot

extend the original flowWorkspace:::.mergeGates function to restore quadGate when applicable

Description

For internal usage.

Usage

## S3 method for class 'quad.gates'
merge(gh, pops, bool = TRUE)

Arguments

gh	a GatingHierarchy
pops	a vector of population names
bool	whether to deal with boolean gate

Value

a nested list of data structure that captures the information of parent, grouped populations (with the same projections) and the reconstructed quadGate object and the respective quadrant pattern

Examples

library(flowWorkspace)
dataDir <- system.file("extdata",package="flowWorkspaceData")
gs <- load_gs(file.path(dataDir, "gs_manual"))
#get the GatingHierarchy object
gh <- gs[[1]]
pops <- gs_pop_get_children(gh, "CD4")
grps  <- ggcyto:::merge.quad.gates(gh, pops)
length(grps) # pops are grouped into two
grps[[1]] # each group is annotaed with quadGate information

ggcyto:::merge.quad.gates(gh, gs_pop_get_children(gh, "CD3+")) # cd3 subsets are not coercible to quadgate thus return as they are

RGLab/ggcyto documentation built on March 3, 2024, 6:23 p.m.