check_coloc_data_format: Check coloc data format

In RHReynolds/colochelpR: `colochelpR` is a home for helper functions for executing coloc

Check coloc data format

Description

Checks that the necessary columns for coloc are present and are the correct type (num, character) currently for the betas requires: (i) SNP - chr/pos or rsids used to join the two datasets; (ii) beta; (iii) varbeta; (iv) maf (option depending on the check_maf argument).

Usage

check_coloc_data_format(df, beta_or_pval, check_maf)

Arguments

df	Dataframe to check the columns of
beta_or_pval	Either "beta" or "pval" depending on whether you want to use betas or pvals in the coloc analysis.
check_maf	lgl. Should function check if the maf is present?

Value

Inputted dataframe with columns the correct type.

RHReynolds/colochelpR documentation built on June 18, 2022, 5:53 a.m.