Files in RachelQueen1/Spaniel
Spatial Transcriptomics Analysis
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS
NEWS.md
R/addClusterCols.R
R/addCoordinates.R
R/createObjects.R
R/parseImage.R
R/removeSpots.R
R/shinySpaniel.R
R/spanielPlot.R
R/spanielPlotInternals.R
R/tenX.R
R/utilities.R
README.md
inst/1000L2_barcodes.txt
inst/HE_Rep1_resized.jpg
inst/ShinySpaniel/app.R
inst/extdata/counts.rds
inst/extdata/image.rds
inst/extdata/outs/filtered_feature_bc_matrix/barcodes.tsv.gz
inst/extdata/outs/filtered_feature_bc_matrix/features.tsv.gz
inst/extdata/outs/filtered_feature_bc_matrix/matrix.mtx.gz
inst/extdata/outs/spatial/scalefactors_json.json
inst/extdata/outs/spatial/tissue_lowres_image.png
inst/extdata/outs/spatial/tissue_positions_list.csv
inst/extdata/sceData.rds
inst/points_to_remove.txt
inst/spot_positions.tsv
man/addCoordinates.Rd
man/createSCE.Rd
man/createSeurat.Rd
man/createVisiumSCE.Rd
man/markClusterCol.Rd
man/parseImage.Rd
man/removeSpots.Rd
man/runShinySpaniel.Rd
man/selectSpots.Rd
man/spanielPlot.Rd
vignettes/spaniel-vignette-tenX-import.R
vignettes/spaniel-vignette-tenX-import.Rmd
vignettes/spaniel-vignette-tenX-import.html
