Description Usage Arguments Value
This function runs the whole FIT pipeline: checks input file format, pre-processes data (for microarray data only) and computes predictions.
1 | FIT(MouseFile, DataType)
|
MouseFile |
File name that includes the mouse data, in CSV format |
DataType |
Either "microarray" or "rnaseq", depending on the technology by which the data was assayed. |
A data.frame containing the following columns:
Mouse.Entrez, Human.Entrez, Mouse.symbol, Human.symbol - Gene IDs
Mouse_FoldChange - Mouse fold-change as computed from the mouse input data
Mouse_Ztest - Mouse Z-test values as computed from the mouse input data
FIT_prediction - Human effect-size prediction by the FIT model
FIT_percentile - Percentiles of absolute values of FIT's predictions
UpDown - Sign of prediction
CI_low, CI_low, CI_size, CI_percentile - Confidenc einterval values (low, high), overall size (high-low) and percentile
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