GetGSEAMatrix: Get Matrix from Enrichment Results
In RausellLab/CelliD: Unbiased Extraction of Single Cell gene signatures using Multiple Correspondence Analysis
GetGSEAMatrix R Documentation
Get Matrix from Enrichment Results
Description
Extract enrcihment score Matrix from RunGSEA functions.
Usage
GetGSEAMatrix(X, metric = "ES")
Arguments
X
an enrichment results obtained by RunGroupGSEA or RunCellGSEA
metric
a character indicating which metric to use as value of matrix (ES, NES, padj, pval)
Value
A matrix of geneset enrichment metric with cell/group at columns and pathways/genesets at rows
Examples
seuratPbmc <- RunMCA(seuratPbmc, nmcs = 5)
GSEAResults <- RunGroupGSEA(seuratPbmc, Hallmark, group.by = "seurat_clusters", dims = 1:5)
GSEAMatrix <- GetGSEAMatrix(GSEAResults)
RausellLab/CelliD documentation built on Jan. 12, 2024, 3:44 a.m.
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| GetGSEAMatrix | R Documentation |
Get Matrix from Enrichment Results
Description
Extract enrcihment score Matrix from RunGSEA functions.
Usage
GetGSEAMatrix(X, metric = "ES")
Arguments
X |
an enrichment results obtained by RunGroupGSEA or RunCellGSEA |
metric |
a character indicating which metric to use as value of matrix (ES, NES, padj, pval) |
Value
A matrix of geneset enrichment metric with cell/group at columns and pathways/genesets at rows
Examples
seuratPbmc <- RunMCA(seuratPbmc, nmcs = 5)
GSEAResults <- RunGroupGSEA(seuratPbmc, Hallmark, group.by = "seurat_clusters", dims = 1:5)
GSEAMatrix <- GetGSEAMatrix(GSEAResults)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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