GetGeneCellCoordinates: GeneCellCoordinates

In RausellLab/CelliD: Unbiased Extraction of Single Cell gene signatures using Multiple Correspondence Analysis

GeneCellCoordinates

Description

Get coordinates of both cells and features in a matrix

Usage

GetGeneCellCoordinates(X, reduction, dims, features)

Arguments

X	Seurat or SingleCellExperiment Object
reduction	Which dimensionality reduction to use, must be based on MCA.
dims	A vector of integers indicating which dimensions to use with reduction embeddings and loadings for distance calculation.
features	Character vector of feature names to subset feature coordinates. If not specified will take all features available from specified reduction Loadings.

Value

A matrix with gene and cell coordinates of MCA

RausellLab/CelliD documentation built on Jan. 12, 2024, 3:44 a.m.