cor_nwk: Plot a correlation diagram

In Rekyt/divr: Custom Functions from ECOPAR people

Description

Summary diagram of the correlations between variables

Usage

cor_nwk(dat, labels = NA, phylo = NULL, method = "pearson",
  p.critic = 0.05, pval.adjust = NULL, order = TRUE, col = c(1,
  "grey50"), lty = c(1, 1))

Arguments

dat	a matrix or data.frame with variables in column.
labels	custom label vector in the same order than column names.
phylo	NULL or an object of class phylo representing the phylogeny (with branch lengths) to consider
method	method used for the correlation test. One of "pearson" (default), "kendall", or "spearman".
p.critic	Critical p.value under which a correlation line should be drawn
pval.adjust	method to adjust p-values in "holm", "hochberg", "hommel", "bonferroni", "BH", "BY", "fdr".
order	logical to order variables according to a clustering method.
col	2 length vector of colour names for positive and negative correlation.
lty	2 length vector of line type for positive and negative correlation (see par for more details).

Author(s)

Jules Segrestin

Examples

data("mtcars")
cor_nwk(mtcars)

Rekyt/divr documentation built on April 1, 2020, 5:35 a.m.