phylo.cor.test: Phylogenetic correlation test using Pearson's product moment

In Rekyt/divr: Custom Functions from ECOPAR people

Description

Test for association between paired samples, using the Pearson's product moment correlation coefficient and accounting for the dataset phylogenetic structure

Usage

phylo.cor.test(x, y, tree, method = c("pcov", "pic"),
  lambda_est = FALSE, quite = FALSE)

Arguments

x, y	numeric vectors of data values. x and y must have the same length
tree	an object of class phylo representing the phylogeny (with branch lengths) to consider
method	pcov to use a phylogenetic trait variance-covariance matrix or pic to use phylogenetically Independent Contrasts
lambda_est	if method is pcov, logical for lambda otpimization using likelihood, if false lambda = 1 ("BM")
quite	logical for function messages

Rekyt/divr documentation built on April 1, 2020, 5:35 a.m.