A dataset containing GWAS data
Dataframe, one row per SNP, with 6 columns (PLINK –logistic/–linear output format)
Chromosome for SNP (sex chromosomes coded numerically). Data type: integer
Chromosomal position for each SNP, in base pairs. Data type: integer
Variant ID (such as dbSNP ID "rs..."). Data type: character Note: Must be the same naming scheme as used in eQTL.df to ensure proper matching.
p-value for the SNP from GWAS analysis. Data type: numeric
beta for the SNP from GWAS analysis. Data type: numeric
OPTIONAL Name of the phenotype for which the GWAS data refers. Data type: character This column is optional and is useful if your GWAS.df contains data for multiple phenotypes, such as one might obtain from a PheWAS. If GWAS.df does not contain a PHE column, eQTpLot will assume all the supplied GWAS data is for a single phenotype, with a name to be specified with the trait argument.
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