LD.df.example: LD data

In RitchieLab/eQTpLot: Visualization of Colocalization Between eQTL and GWAS Data

LD data

Description

A dataset containing LD data

Usage

data(LD.df.example)

Format

Dataframe of SNP linkage data, one row per SNP pair, with 5 columns (PLINK –r2 output format)

BP_A

Base pair position of the first variant in the LD pair. Data type: integer

SNP_A

Variant ID of the first variant in the LD pair. Data type: character Note: only variants that also appear in the GWAS.df SNP column will be used for LD analysis.

BP_B

Base pair position of the second variant in the LD pair. Data type:integer

SNP_B

Variant ID of the second variant in the LD pair. Data type: character Note: only SNPs that also appear in the GWAS.df SNP column will be used for LD analysis.

R2

Squared correlation measure of linkage between the two variants. Data type: numeric

RitchieLab/eQTpLot documentation built on May 16, 2022, 8:39 p.m.