Genes.df.example: Gene data
In RitchieLab/eQTpLot: Visualization of Colocalization Between eQTL and GWAS Data

Genes.df.example

R Documentation

Gene data

A dataset containing Gene data

data(Genes.df.example)

data(Genes.df.example)

Dataframe, one row per SNP, with 6 columns

Gene: Gene symbol/name for which the Coordinate data refers to. Data type: character Note: gene symbol/name must match entries in eQTL.df to ensure proper matching.
CHR: Chromosome the gene is on. Data type: integer Note: do not include a "car" prefix, and sex chromosomes should be coded numerically.
Start: Chromosomal coordinate of start position (in basepairs) to use for gene. Data type: integer Note: this should be the smaller of the two values between Start and Stop.
Stop: Chromosomal coordinate of end position (in basepairs) to use for gene. Data type: integer Note: this should be the larger of the two values between Start and Stop.
build: The genome build (either "hg19" or "hg38") for the coordinate data. Data type: character The default Genes.df dataframe contains entries for both genome builds for each gene, and the script will select the appropriate entry based on the specified gbuild (default is hg19)).

Dataframe, one row per SNP, with 6 columns

Gene: Gene symbol/name for which the Coordinate data refers to. Data type: character Note: gene symbol/name must match entries in eQTL.df to ensure proper matching.
CHR: Chromosome the gene is on. Data type: integer Note: do not include a "car" prefix, and sex chromosomes should be coded numerically.
Start: Chromosomal coordinate of start position (in basepairs) to use for gene. Data type: integer Note: this should be the smaller of the two values between Start and Stop.
Stop: Chromosomal coordinate of end position (in basepairs) to use for gene. Data type: integer Note: this should be the larger of the two values between Start and Stop.
build: The genome build (either "hg19" or "hg38") for the coordinate data. Data type: character The default Genes.df dataframe contains entries for both genome builds for each gene, and the script will select the appropriate entry based on the specified gbuild (default is hg19).