Files in RockefellerUniversity/profileplyr
Visualization and annotation of read signal over genomic ranges with profileplyr
.Rbuildignore
.travis.yml
DESCRIPTION
NAMESPACE
NEWS
R/allClasses.R
R/allMethods.R
appveyor.yml
data/K27ac_GRlist_hind_liver_top5000.rda
data/gene_list_character.rda
data/gene_list_dataframe.rda
inst/extdata/Sorted_Hindbrain_day_12_1_filtered.bam
inst/extdata/Sorted_Liver_day_12_1_filtered.bam
inst/extdata/example_deepTools_MAT
inst/extdata/newranges.bed
inst/extdata/newranges_small.bed
inst/scripts/extdata_description
man/BamBigwig_to_chipProfile.Rd
man/K27ac_GRlist_hind_liver_top5000.Rd
man/annotateRanges.Rd
man/annotateRanges_great.Rd
man/as_profileplyr.Rd
man/clusterRanges.Rd
man/convertToEnrichedHeatmapMat.Rd
man/export_deepToolsMat.Rd
man/gene_list_character.Rd
man/gene_list_dataframe.Rd
man/generateEnrichedHeatmap.Rd
man/generateProfilePlot.Rd
man/groupBy.Rd
man/inherit_group_function.Rd
man/orderBy.Rd
man/params.Rd
man/profileplyr.Rd
man/sampleData.Rd
man/subset_GR_GL_common_top.Rd
man/subsetbyGeneListOverlap.Rd
man/subsetbyRangeOverlap.Rd
man/summarize.Rd
tests/testthat.R
tests/testthat/test_deeptoolsImport.R
tests/testthat/test_exporting.R
tests/testthat/test_indexing.R
tests/testthat/test_soggiImport.R
vignettes/K27ac_GRoverlap.jpg
vignettes/groupByGene_HB_Liv.jpg
vignettes/kmeans_cluster_mat.jpg
vignettes/profileplyr.Rmd
