inherit_group_function: Redundant code for inheriting grouping wrapped into...

In RockefellerUniversity/profileplyr: Visualization and annotation of read signal over genomic ranges with profileplyr

Redundant code for inheriting grouping wrapped into subsetbyRangeOverlap() or subsetbyGeneListOverlap() functions

Description

Redundant code for inheriting grouping wrapped into subsetbyRangeOverlap() or subsetbyGeneListOverlap() functions

Usage

inherit_group_function(object, rowGroupsInUse_input, type, separateDuplicated)

Arguments

object	A profileplyr object
rowGroupsInUse_input	the inherited rowGroupsInUse
type	Either "GR" for subsetbyRangeOverlap() function or "GL" for subsetbyGeneListOverlap() function
separateDuplicated	A logical argument, if TRUE then regions that overlap multiple inputs to 'GRanges' argument will be separated and made into their own group. All possible combinations of region overlaps will be tested, so it is not recommended to have more than 3 groups if this option is TRUE. If FALSE, then regions that overlap each individual 'GRanges' input will be in the output, and if one region overlaps multiple 'GRanges' inputs, then it will be duplicated in the output and will show up in the section for each group.

Details

tbd

Value

A profileplyr object

RockefellerUniversity/profileplyr documentation built on Jan. 28, 2023, 10:09 a.m.