as_profileplyr: Import ChIPprofile object to profileplyr

In RockefellerUniversity/profileplyr: Visualization and annotation of read signal over genomic ranges with profileplyr

Import ChIPprofile object to profileplyr

Description

Function to convert soGGi ChIPprofile objects to profileplyr object .

Usage

as_profileplyr(chipProfile, names = NULL)

Arguments

chipProfile	A ChIPprofile object as created by soGGi regionPlot() function.
names	Column to select row IDs/names from ChIPprofile mcols.

Value

A profileplyr object

Examples

library(soGGi)
data("ik_Profiles")
proplyr <- as_profileplyr(ik_Profiles,names="ID")
export_deepToolsMat(proplyr,con=file.path(tempdir(),"ik_Profiles.MAT"))

RockefellerUniversity/profileplyr documentation built on Jan. 28, 2023, 10:09 a.m.