Man pages for RockefellerUniversity/profileplyr
Visualization and annotation of read signal over genomic ranges with profileplyr

annotateRangesAnnotate profileplyr ranges to genes using ChIPseeker
annotateRanges_greatAnnotate profileplyr ranges to genes using rGREAT
as_profileplyrImport ChIPprofile object to profileplyr
BamBigwig_to_chipProfileBamBigwig_to_chipProfile
clusterRangesCluster Ranges
convertToEnrichedHeatmapMatexport a profileplyr object to a list of matrices that can be...
export_deepToolsMatExport and import profileplyr from/to deeptools
gene_list_characterCharacter vector of the top differentially expressed genes...
gene_list_dataframeDataframe of top differentially expressed genes from...
generateEnrichedHeatmapgenerateEnrichedHeatmap
generateProfilePlotImport ChIPprofile object to profileplyr
groupBygroup the rows and ranges of the profileplyr object
inherit_group_functionRedundant code for inheriting grouping wrapped into...
K27ac_GRlist_hind_liver_top5000GRangesList of the top 5000 H3K27ac peaks from hindbrain and...
orderBychoose the column by which to order the ranges by within each...
paramsRetrieve and set parameters in profileplyr object
profileplyrJoin, subset and manipulate ChIPprofile objects
sampleDataRetrieve and set sample data in profileplyr object
subsetbyGeneListOverlapSubset ranges based on overlap with lists of Gene sets
subsetbyRangeOverlapSubset ranges based on overlap with a GRanges object
subset_GR_GL_common_topRedundant code wrapped into subsetbyRangeOverlap() or...
summarizesummarize the rows of a deepTools matrix
RockefellerUniversity/profileplyr documentation built on Jan. 28, 2023, 10:09 a.m.