filenamesFromOSW: Get mzML filenames from osw RUN table.

Description Usage Arguments Value Author(s) Examples

View source: R/get_filenames.R

Description

Get mzML filenames from osw RUN table.

Usage

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Arguments

dataPath

(char) path to xics and osw directory.

pattern

(char) must be either *.osw or *merged.osw .

Value

A dataframe with three columns:

spectraFile

(string) as mentioned in RUN table of osw files.

spectraFileID

(string) ID in RUN table of osw files.

featureFile

(string) Path to the feature file.

Author(s)

Shubham Gupta, shubh.gupta@mail.utoronto.ca

ORCID: 0000-0003-3500-8152

License: (c) Author (2019) + GPL-3 Date: 2019-12-14

Examples

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dataPath <- system.file("extdata", package = "DIAlignR")
## Not run: 
filenamesFromOSW(dataPath, "*.osw")
filenamesFromOSW(dataPath, "*merged.osw")

## End(Not run)

Roestlab/DIAlign documentation built on Feb. 25, 2021, 5:18 p.m.