mapPrecursorToChromIndices: Merge precursor and transitions mapping with chromatogram...
In Roestlab/DIAlignR: Dynamic Programming Based Alignment of MS2 Chromatograms
Description
Usage
Arguments
Value
Author(s)
See Also
View source: R/merge_osw_mzml.R
Description
Merges dataframes on transition_ids(OSW) = chromatogramId(mzML).
Usage
1
mapPrecursorToChromIndices(prec2transition, chromHead)
Arguments
prec2transition
(dataframe) This has two columns: transition_group_id and transition_ids with integer values.
chromHead
(dataframe) This has two columns: chromatogramId and chromatogramIndex with integer values.
Value
(dataframe) having following columns:
transition_group_id
(string) it is either fetched from PRECURSOR.GROUP_LABEL or a combination of PEPTIDE.MODIFIED_SEQUENCE and PRECURSOR.CHARGE from osw file.
chromatogramIndex
(integer) Index of chromatogram in mzML file.
Author(s)
Shubham Gupta, shubh.gupta@mail.utoronto.ca
ORCID: 0000-0003-3500-8152
License: (c) Author (2019) + GPL-3
Date: 2020-04-07
See Also
Roestlab/DIAlignR documentation built on March 3, 2021, 9:09 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s) See Also
View source: R/merge_osw_mzml.R
Description
Merges dataframes on transition_ids(OSW) = chromatogramId(mzML).
Usage
1 | mapPrecursorToChromIndices(prec2transition, chromHead)
|
Arguments
prec2transition |
(dataframe) This has two columns: transition_group_id and transition_ids with integer values. |
chromHead |
(dataframe) This has two columns: chromatogramId and chromatogramIndex with integer values. |
Value
(dataframe) having following columns:
transition_group_id |
(string) it is either fetched from PRECURSOR.GROUP_LABEL or a combination of PEPTIDE.MODIFIED_SEQUENCE and PRECURSOR.CHARGE from osw file. |
chromatogramIndex |
(integer) Index of chromatogram in mzML file. |
Author(s)
Shubham Gupta, shubh.gupta@mail.utoronto.ca
ORCID: 0000-0003-3500-8152
License: (c) Author (2019) + GPL-3 Date: 2020-04-07
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.