masterXICs_DIAlignR: Master fragment-ion chromatograms from two parents
In Roestlab/DIAlignR: Dynamic Programming Based Alignment of MS2 Chromatograms
Description
Usage
Format
Source
Description
Created merged XICs of peptide (ID = 4618) 14299_QFNNTDIVLLEDFQK/3 from two SWATH runs:
run1 : hroest_K120809_Strep0%PlasmaBiolRepl2_R04_SW_filt.chrom.mzML
run2 : hroest_K120809_Strep10%PlasmaBiolRepl2_R04_SW_filt.chrom.mzML
Usage
1
Format
The format is similar to the output of childXICs. A list of two elements: First element contains six fragmentation chromatograms.
The second element has aligned parent time-vectors and corresponding child time-vector. It has
five columns:
- indexAligned.ref
(integer) aligned indices of reference run.
- indexAligned.eXp
(integer) aligned indices of experiment run.
- tAligned.ref
(numeric) aligned time-vector of reference run.
- tAligned.eXp
(numeric) aligned time-vector of experiment run.
- alignedChildTime
(numeric) aligned time-vector of master run.
Source
File test_GenerateData.R has source code
to generate the example data.
Roestlab/DIAlignR documentation built on March 3, 2021, 9:09 a.m.
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Description Usage Format Source
Description
Created merged XICs of peptide (ID = 4618) 14299_QFNNTDIVLLEDFQK/3 from two SWATH runs:
run1 : hroest_K120809_Strep0%PlasmaBiolRepl2_R04_SW_filt.chrom.mzML
run2 : hroest_K120809_Strep10%PlasmaBiolRepl2_R04_SW_filt.chrom.mzML
Usage
1 |
Format
The format is similar to the output of childXICs. A list of two elements: First element contains six fragmentation chromatograms. The second element has aligned parent time-vectors and corresponding child time-vector. It has five columns:
- indexAligned.ref
(integer) aligned indices of reference run.
- indexAligned.eXp
(integer) aligned indices of experiment run.
- tAligned.ref
(numeric) aligned time-vector of reference run.
- tAligned.eXp
(numeric) aligned time-vector of experiment run.
- alignedChildTime
(numeric) aligned time-vector of master run.
Source
File test_GenerateData.R has source code to generate the example data.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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