oswFiles_DIAlignR: Analytes information from osw files

In Roestlab/DIAlignR: Dynamic Programming Based Alignment of MS2 Chromatograms

Description

analytes info from three SWATH runs:

run0 : hroest_K120808_Strep10%PlasmaBiolRepl1_R03_SW_filt.chrom.mzML
run1 : hroest_K120809_Strep0%PlasmaBiolRepl2_R04_SW_filt.chrom.mzML
run2 : hroest_K120809_Strep10%PlasmaBiolRepl2_R04_SW_filt.chrom.mzML

Usage

oswFiles_DIAlignR

Format

A list of three elements where each element consists of a dataframe:

transition_group_id

ID of each peptide

RT

Retention time, in sec

intensity

Inensity of associated feature

leftWidth

Left width of the peak, in sec

rightWidth

Right width of the peak, in sec

peak_group_rank

Ranking of associated feature

m_score

qvalue of associated feature

Source

Raw files are downloaded from Peptide Atlas. File test_GenerateData.R has source code to generate the example data.

Roestlab/DIAlignR documentation built on March 3, 2021, 9:09 a.m.