COSMIC_v3.3: Mutational signatures data from COSMIC, Catalogue Of Somatic...
In Rozen-Lab/cosmicsig: Mutational Signatures from COSMIC (Catalogue of Somatic Mutations in Cancer)
COSMIC_v3.3 R Documentation
Mutational signatures data from COSMIC, Catalogue Of Somatic Mutations In
Cancer (v3.3 - June 2022)
Description
Mutational signatures data from COSMIC, Catalogue Of Somatic Mutations In
Cancer (v3.3 - June 2022)
Usage
COSMIC_v3.3
Format
A list with two elements, signature and etiology.
-
signature is a list with the same structure as
signature.
-
etiology is a list with the same structure as
etiology.
Remark
The signatures are all genome signatures.
See CatalogRowOrder
in package ICAMS for the classification of mutation types.
Source
https://cancer.sanger.ac.uk/signatures/.
Examples
sbs96_sig_v3.3 <- COSMIC_v3.3$signature$GRCh37$SBS96
Rozen-Lab/cosmicsig documentation built on Sept. 3, 2023, 8:50 a.m.
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| COSMIC_v3.3 | R Documentation |
Mutational signatures data from COSMIC, Catalogue Of Somatic Mutations In Cancer (v3.3 - June 2022)
Description
Mutational signatures data from COSMIC, Catalogue Of Somatic Mutations In Cancer (v3.3 - June 2022)
Usage
COSMIC_v3.3
Format
A list with two elements, signature and etiology.
-
signatureis a list with the same structure assignature. -
etiologyis a list with the same structure asetiology.
Remark
The signatures are all genome signatures.
See CatalogRowOrder
in package ICAMS for the classification of mutation types.
Source
https://cancer.sanger.ac.uk/signatures/.
Examples
sbs96_sig_v3.3 <- COSMIC_v3.3$signature$GRCh37$SBS96
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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