SBS96_ID_to_SBS192_ID: Translate SBS96 signature IDs to SBS192 signature IDs by...

In Rozen-Lab/cosmicsig: Mutational Signatures from COSMIC (Catalogue of Somatic Mutations in Cancer)

Translate SBS96 signature IDs to SBS192 signature IDs by adding "-E" if necessary

Description

"-E" added to the name of a transcriptional strand bias signature indicates that it was extracted only from exome sequencing data, and thus reflects transcriptional strand bias in the exome rather than in the entire transcript, including introns.

Usage

SBS96_ID_to_SBS192_ID(sig_ids)

Arguments

sig_ids

Character vector of SBS96 signature IDs.

Value

Character vector of corresponding SBS192 signature IDs; some have "-E" (for exome) post-pended.

Examples

sbs96_ids <- c("SBS1", "SBS23", "SBS25")
sbs192_ids <- SBS96_ID_to_SBS192_ID(sbs96_ids)

Rozen-Lab/cosmicsig documentation built on Sept. 3, 2023, 8:50 a.m.