plot_bed: bed region plotter
In RubD/GeTrackViz2:

Description Usage Arguments Value Examples

This function plots data from bed file

plot_bed(bed, name_bed, color_bed, size_bed = 1, mychr, start_loc,
  end_loc, breaks_wanted = 4, y_title = "SE",
  show_partial_overlap = T, same_y_level = T, axis_line_size = 1,
  marginvec_mm = c(0, 0, 0, 0), reverse_strand = FALSE,
  show_labels = F, print_plot = F)

`bed`	bedpe file for DNA loops or interaction data
`name_bed`	name of sample
`color_bed`	color of track
`size_bed`	size of bed (height)
`mychr`	chromosome
`start_loc`	start location on chromomse
`end_loc`	end location on chromosome
`breaks_wanted`	number of breaks on x-axis
`y_title`	title for y-axis
`show_partial_overlap`	include loops that do not entirely overlap the coordinates
`same_y_level`	plot all bed regions on same height (y-axis)
`axis_line_size`	line size of x-axis
`marginvec_mm`	margin around plot, default = c(0,0,0,0)
`show_labels`	boolean: show x-axis lables
`print_plot`	boolean: print individual plot