Description Usage Arguments Value Examples
This function plots data from bed file
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bed |
bedpe file for DNA loops or interaction data |
name_bed |
name of sample |
color_bed |
color of track |
size_bed |
size of bed (height) |
mychr |
chromosome |
start_loc |
start location on chromomse |
end_loc |
end location on chromosome |
breaks_wanted |
number of breaks on x-axis |
y_title |
title for y-axis |
show_partial_overlap |
include loops that do not entirely overlap the coordinates |
same_y_level |
plot all bed regions on same height (y-axis) |
axis_line_size |
line size of x-axis |
marginvec_mm |
margin around plot, default = c(0,0,0,0) |
show_labels |
boolean: show x-axis lables |
print_plot |
boolean: print individual plot |
ggplot object
1 | plot_bed(bed)
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