plot_coord: genomic coordinate plotter

In RubD/GeTrackViz2:

Description

This function plots genomic coordinates

Usage

plot_coord(mychr, start_loc, end_loc, breaks_wanted = 4,
  label_size = 6, axis_line_size = 0.5, marginvec_mm = c(0, 0, 0, 0),
  reverse_strand = FALSE, show_labels = T, print_plot = F)

Arguments

mychr	chromosome
start_loc	start location on chromomse
end_loc	end location on chromosome
breaks_wanted	number of breaks on x-axis
label_size	label size for x-axis text, default is 6
axis_line_size	line size of x-axis
marginvec_mm	margin around plot, default = c(0,0,0,0)
show_labels	boolean: show x-axis lables
print_plot	boolean: print individual plot

Value

ggplot object

Examples

    plot_coord(mychr, ...)

RubD/GeTrackViz2 documentation built on May 31, 2019, 2:45 p.m.