Silhouette: Silhouette Plot

Description Usage Arguments

View source: R/silhouette.R

Description

Unsupervised way to choose the optimal clustering resolutions or number of clusters. Computes distance matrix based on correlation distance and calculate silhouette scores for a given clustering result. Outputs a silhouette class object and produces a Silhouette plot.

Usage

1
Silhouette(object, cluster_ident, data_from = "pca")

Arguments

object

Seurat object.

cluster_ident

Identity class of clustering.

data_from

By default, data_from = "pca", extract pca embedding as input. In case of data_from = "expression", "data" slot of the expression matrix is used.


RuiyuRayWang/scWidgets documentation built on Dec. 18, 2021, 11:54 a.m.