modify_vlnplot: Parse Seurat violin plot
In RuiyuRayWang/scWidgets: A collection of scRNAseq analysis functions

Description Usage Arguments Details Value

Helper function to reproduce scanpy stacked violin plot with Seurat.

modify_vlnplot(
  obj,
  feature,
  pt.size = 0,
  plot.margin = ggplot2::unit(c(-0.75, 0, -0.75, 0), "cm"),
  ...
)

`obj`	A Seurat object.
`pt.size`	Size of jitter points. Default is 0 (No point is plotted).
`plot.margin`	Adjust the white space between each plot.
`features`	Genes to be plotted.

With violin plot generated by 'Seurat::VlnPlot', this function removes its x-axis text and tick, and adjusts the white space between each plot with plot.margin argument. ... pass any arguments to VlnPlot in Seurat Credit to: Tang Ming https://divingintogeneticsandgenomics.rbind.io/post/stacked-violin-plot-for-visualizing-single-cell-data-in-seurat/

A ggplot object

RuiyuRayWang/scWidgets documentation built on Dec. 18, 2021, 11:54 a.m.