estimate_R_func: Calculates the cumulative incidence over time steps, then...
In RussellXu/rtestimate: Estimation Of Reproductive Number
Description
Usage
Arguments
See Also
Description
Calculates the cumulative incidence over time steps,
then calculates the parameters of the Gamma posterior distribution from the discrete SI distribution,
obtain samples from the Gamma posterior distribution for a given mean SI and std SI.
Usage
1
2
3
4
5
6
estimate_R_func(
incid,
si_sample,
method = c("non_parametric_si", "parametric_si"),
config
)
Arguments
config
See Also
Other EpiEstim:
check_config(),
check_dates(),
check_si_distr(),
check_times(),
discr_si(),
epiestim_rt_plot(),
estimate_R(),
make_config(),
modify_defaults(),
overall_infectivity(),
process_I(),
process_config(),
vnapply()
RussellXu/rtestimate documentation built on Jan. 1, 2022, 7:18 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments See Also
Description
Calculates the cumulative incidence over time steps, then calculates the parameters of the Gamma posterior distribution from the discrete SI distribution, obtain samples from the Gamma posterior distribution for a given mean SI and std SI.
Usage
1 2 3 4 5 6 | estimate_R_func(
incid,
si_sample,
method = c("non_parametric_si", "parametric_si"),
config
)
|
Arguments
config |
See Also
Other EpiEstim:
check_config(),
check_dates(),
check_si_distr(),
check_times(),
discr_si(),
epiestim_rt_plot(),
estimate_R(),
make_config(),
modify_defaults(),
overall_infectivity(),
process_I(),
process_config(),
vnapply()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.