epiestim_rt_plot: Plot outputs of Epiestim function

In RussellXu/rtestimate: Estimation Of Reproductive Number

Description

Plot outputs of Epiestim function

Usage

epiestim_rt_plot(
  x,
  what = c("all", "incid", "R", "SI"),
  add_imported_cases = FALSE,
  options_I = list(col = palette(), transp = 0.7, xlim = NULL, ylim = NULL, interval =
    1L, xlab = "Time", ylab = "Incidence"),
  options_R = list(col = palette(), transp = 0.2, xlim = NULL, ylim = NULL, xlab =
    "Time", ylab = "R"),
  options_SI = list(prob_min = 0.001, col = "black", transp = 0.25, xlim = NULL, ylim =
    NULL, xlab = "Time", ylab = "Frequency"),
  legend = TRUE,
  ...
)

Arguments

...

See Also

Other EpiEstim: check_config(), check_dates(), check_si_distr(), check_times(), discr_si(), estimate_R_func(), estimate_R(), make_config(), modify_defaults(), overall_infectivity(), process_I(), process_config(), vnapply()

RussellXu/rtestimate documentation built on Jan. 1, 2022, 7:18 p.m.