Hotgenes2GeneSet: Generates a custom GeneSet from a Hotgenes object
In Rvirgenslane/Hotgenes: For Visualizing Differential Expression Analysis
View source: R/Hotgenes2GeneSet.R
Hotgenes2GeneSet R Documentation
Generates a custom GeneSet from a Hotgenes object
Description
Generates a custom GeneSet from a Hotgenes object
Usage
Hotgenes2GeneSet(Hotgenes_obj = NULL)
Arguments
Hotgenes_obj
R object generated by DEseq2_export or
Limma_export functions
Value
data.frame with "gene_symbol" and "gs_name".
GeneSet contains genes that are either Enriched or Depleted by the
condition (based on logfoldchange).
Examples
Example_Hotgenes_dir<-system.file("extdata",
"Example_Hotgenes.Rdata",
package = "Hotgenes", mustWork = TRUE)
load(Example_Hotgenes_dir)
Custom_GeneSet<-Hotgenes2GeneSet(Example_Hotgenes)
head(Custom_GeneSet)
Rvirgenslane/Hotgenes documentation built on June 15, 2024, 2:16 a.m.
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View source: R/Hotgenes2GeneSet.R
| Hotgenes2GeneSet | R Documentation |
Generates a custom GeneSet from a Hotgenes object
Description
Generates a custom GeneSet from a Hotgenes object
Usage
Hotgenes2GeneSet(Hotgenes_obj = NULL)
Arguments
Hotgenes_obj |
R object generated by DEseq2_export or Limma_export functions |
Value
data.frame with "gene_symbol" and "gs_name". GeneSet contains genes that are either Enriched or Depleted by the condition (based on logfoldchange).
Examples
Example_Hotgenes_dir<-system.file("extdata",
"Example_Hotgenes.Rdata",
package = "Hotgenes", mustWork = TRUE)
load(Example_Hotgenes_dir)
Custom_GeneSet<-Hotgenes2GeneSet(Example_Hotgenes)
head(Custom_GeneSet)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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