Vplot: Wrapper for EnhancedVolcano

In Rvirgenslane/Hotgenes: For Visualizing Differential Expression Analysis

Wrapper for EnhancedVolcano

Description

Wrapper for EnhancedVolcano

Usage

Vplot(
  Hotgenes_input = NULL,
  pval_cut = 0.1,
  FCcutoff = 0,
  stuffer = 1,
  contrast = 1
)

Arguments

Hotgenes_input	R object generated by DEseq2_export or Limma_export functions
pval_cut	numeric indicating pvalue cut off
FCcutoff	numeric indicating logfoldchange cut off
stuffer	is a positive number added or subtracted from pvalue or fold change values, used for x and y limits.
contrast	name or numeric value to retrieve differential expression data. See names(Hotgenes_input$Output_DE).

Examples

Example_Hotgenes_dir<-system.file("extdata",
"Example_Hotgenes.Rdata",
package = "Hotgenes", mustWork = TRUE)
load(Example_Hotgenes_dir)
names(Example_Hotgenes$Output_DE)
Vplot(Example_Hotgenes, contrast = 1)

Rvirgenslane/Hotgenes documentation built on June 15, 2024, 2:16 a.m.