Description Usage Arguments Examples
Wrapper for EnhancedVolcano
1 2 3 4 5 6 7 |
Hotgenes_input |
R object generated by DEseq2_export or Limma_export functions |
pval_cut |
numeric indicating pvalue cut off |
FCcutoff |
numeric indicating logfoldchange cut off |
stuffer |
is a positive number added or subtracted from pvalue or fold change values, used for x and y limits. |
contrast |
name or numeric value to retrieve differential expression data. See names(Hotgenes_input$Output_DE). |
1 2 3 4 5 6 | Example_Hotgenes_dir<-system.file("extdata",
"Example_Hotgenes.Rdata",
package = "Hotgenes", mustWork = TRUE)
load(Example_Hotgenes_dir)
names(Example_Hotgenes$Output_DE)
Vplot(Example_Hotgenes, contrast = 1)
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