Pheatmap_Viz: Provides expression data for select genes and samples

In Rvirgenslane/Hotgenes: For Visualizing Differential Expression Analysis

Provides expression data for select genes and samples

Description

Provides expression data for select genes and samples

Usage

Pheatmap_Viz(
  DE_Input = NULL,
  hotList = NULL,
  samples_ids = 1,
  readouts = 1,
  ncut = NULL,
  selected_contrast = 1,
  lfc_cut = 0
)

Arguments

DE_Input	Object generated by DEseq2_export or Limma_export functions.
hotList	vector of gene symbols to select
samples_ids	vector of sample ids to select
readouts	index of normalized data to use. See names(Hotgenes_input$Normalized_Expression).
ncut	numeric value for the maximum number of genes to show.
selected_contrast	name or numeric value to retrieve differential expression data. See names(Hotgenes_input$Output_DE).
lfc_cut	absolute logfoldchange cutoff.

Rvirgenslane/Hotgenes documentation built on June 15, 2024, 2:16 a.m.