Pheatmap_Viz: Provides expression data for select genes and samples

View source: R/Pheatmap_Viz.R

Pheatmap_VizR Documentation

Provides expression data for select genes and samples

Description

Provides expression data for select genes and samples

Usage

Pheatmap_Viz(
  DE_Input = NULL,
  hotList = NULL,
  samples_ids = 1,
  readouts = 1,
  ncut = NULL,
  selected_contrast = 1,
  lfc_cut = 0
)

Arguments

DE_Input

Object generated by DEseq2_export or Limma_export functions.

hotList

vector of gene symbols to select

samples_ids

vector of sample ids to select

readouts

index of normalized data to use. See names(Hotgenes_input$Normalized_Expression).

ncut

numeric value for the maximum number of genes to show.

selected_contrast

name or numeric value to retrieve differential expression data. See names(Hotgenes_input$Output_DE).

lfc_cut

absolute logfoldchange cutoff.


Rvirgenslane/Hotgenes documentation built on June 15, 2024, 2:16 a.m.